Try out ANTS Tool
A. Build
A.1. Error
CMake magic does not work for now.
A.2. Temporary solution
export ANTSScriptPATH=/ipldev/scratch/eunyokim/src/ANTSFromGitHub/ANTS/Scripts/
PEXEC=${ANTSScriptPATH}ANTSpexec.sh
SGE=${ANTSScriptPATH}waitForSGEQJobs.pl
PBS=${ANTSScriptPATH}waitForPBSQJobs.pl
XGRID=${ANTSScriptPATH}waitForXGridJobs.pl
B. Testing with five subjects
bash -x /ipldev/scratch/eunyokim/src/ANTSFromGitHub/ANTS/Scripts/antsMultivariateTemplateConstruction.sh -d 3 -c 0 -k 2 -o ./ANTSOut -z /ipldev/scratch/eunyokim/src/BRAINS20111028/build-Darwin/ReferenceAtlas-build/Atlas/Atlas_20120104/template_t1.nii.gz /ipldev/scratch/eunyokim/src/ANTS/trial/fiveSubjectOnly.csv 2>&1|tee result.log
The above script is running (Started on Friday 10th Feb)
Results: Four Iterations pdf
C. Testing with 30 subjects
bash -x /ipldev/scratch/eunyokim/src/ANTSFromGitHub/ANTS/Scripts/antsMultivariateTemplateConstruction.sh -d 3 -c 2 -j 4 -k 2 -o ./ANTS -z /ipldev/scratch/eunyokim/src/BRAINS20111028/build-Darwin/ReferenceAtlas-build/Atlas/Atlas_20120104/templa_t1.nii.gz /hjohnson/HDNI/PREDICT_TRAINING/regina_ann/TrainingModels/ANTSTrails/30Subjects/30Subjects.csv 2>&1|tee logInTheBuild.txt
ANTS trial result with 30 subjects:
What do you think?!


Tasks attempted description