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  • ARCHIVE- outdated BRAINS2 -Developer-Notes

BRAINS design Documentation

GUI

The valid states of the BRAINS GUI interface.

Transforms in Air, ITK, and VNL.

  • Air
  • ITK
  • VNL

This concerns making the homogenous affine transforms of
Air work properly when converted to rigid/quaternion transforms
in ITK.

talairach_parameters file format

Basic format:

  1. # # # 1 2 3 4
  2. # # 5 6 7
  3. # # 8 9 10
  1. Anterior-most brain tissue Z coordinate ( +1 in older files )
  2. AC point Z coordinate
  3. PC point Z coordinate
  4. Posterior-most brain tissue Z coordinate
  5. Left-most brain tissue X coordinate
  6. AC/PC X coordinate
  7. Right-most brain tissue X coordinate
  8. Superior-most Y coordinate
  9. AC/PC Y coordinate
  10. Inferior-most Y coordinate
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