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BRAINS
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This wiki is a resource for the brain tracing guidelines used to create structural labels for the ANN.

April 2014 - Jacquie Marietta and Kathy Jones

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Documents describing the brain structure tracing guidelines used in the ANN.  Some documents have added notes by Research Assistants that were used in the tracing those structures. 

Amygdala Guidelines

A collection of publications regarding the Amygdala:

...

Amaral Amygdala.pdf

bronen_ag_1991.pdf


Caudate Guidelines

caudate.pdf           Caudate Tracing Guidelines - P. Westmoreland, K. Cretsinger

 

Cerebellar Guidelines

cerebellum_lobes.pdf      Cerebellum Lobe Tracing Guidelines  - Excerpt from: Pierson, R., Westmoreland Corson, P., Sears, L.,Alicata, D., Magnotta, V., O’Leary, D., and Andreasen, N.C 2002: Manual and Semiautomated Measurement of Cerebellar Subregions on MR Images. Neuroimage, in press.
Cerebellum_tracing_guide.pdf        Cerebellum Tracing Guidelines - unknown

 

Cingulate Guidelines

McCormick 2006 (ACC methods).pdf      Anterior cingulate cortex: An MRI-based parcellation method - Laurie M. McCormick, Steven Ziebell, Peggy Nopoulos, Martin Cassell, Nancy C. Andreasen, and Michael Brumm

Anterior_Cingulate_ppt_10_2013.ppt    Tracing guidelines in PowerPoint - J. Marietta, K. Jones

Subgenual Tracing Guide_4_2014.ppt   Tracing guidelines for Subgenual Cingulate in PowerPoint - J. Marietta, K. Jones

 

Globus Pallidus Guidelines

globus.pdf     Color Enhancement of Multispectral MR Images: Improving the Visualization of Subcortical Structures - Julianna Ward, Vincent Magnotta, Nancy C. Andreason, Wendy Ooteman, Peg Nopoulos and Ronald Pierson

Globus_tracing_guidelines_orig.pdf   Globus Pallidus Tracing Guidelines - J. Ward, R. Fuller, D. Eccher, K. Cretsinger

 

Hippocampus Guidelines

hippocampus.pdf        A New Method for the In Vivo Volumetric Measurement of the Human Hippocampus With High Neuroanatomical Accuracy - J. Pantel, D.S. O'Leary, K. Cretsinger, H.J. Bockholt, H. Keefe, V.A. Magnotta and N.C. Andreason
Hippocampus_tracing_guide.pdf       Hippocampus Tracing Guidelines - J. Pantel, K. Cretsinger, H. Keefe
hippo_guidelines.doc         Hippocampus Guidelines - H. Keefe
Hippocampus_images.doc       Hippocampus Guide traces  - K. Jones

 

Putamen Guidelines

putamen.pdf      Putamen Tracing Guidelines - P. Westmoreland, K. Cretsinger

 

Thalamus Guidelines

thalamus.pdf   Thalamus Tracing Guidelines - W. Ooteman, K. Cretsinger
Mediodorsal_nucleus_tracing_thalamus.pdf   Mediodorsal Nucleus Tracing Guidelines - S. Ziebel, K. Cretsinger

 

Supplemental Guidelines

Callen_Supplementary_materials_I.doc        Description of structural boundaries of limbic and non-limbic brain regions. 

Image_Evaluation_raw_3T_ppt_012013.ppt        Reviewing raw scans in ImageEval - K. Jones, J. Marietta

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